Publications

2022/11/6 15:002024/8/2 8:30

当研究室＠大阪大学の現メンバーと元メンバーの名前はハイライトで示されています。当研究室の論文リストはGoogle ScholarとResearch Mapでも確認できます。

Current and former members of our laboratory at Osaka university are highlighted. Our publication list can also be found via Google Scholar and Research Map.

Preprints

Motone K, Kontogiorgos-Heintz D, Wee J, Kurihara K, Yang S, Roote G, Fang Y, Cardozo N, Nivala J. Multi-pass, single-molecule nanopore reading of long protein strands with single-amino acid sensitivity. bioRxiv, 2023.10.19.563182.📄

Kosaka Y, Miyawaki Y, Mori M, Aburaya S, Fukuyama M, Ueda M, Aoki W. Reconstitution of ribosome self-replication outside a living cell. bioRxiv, 2022.08.29.505692.📄

Original Articles

2024

83) Nishizawa C, Aburaya S, Kosaka Y, Sugase K, Aoki W. Optimizing in vitro expression balance of central dogma-related genes using parallel reaction monitoring. J. Biosci. Bioeng., 138(2):97–104, 2024.📄

82) Mizutani M, Kuroda S, Oku M, Aoki W, Masuya T, Miyoshi H, Murai M. Identification of proteins involved in intracellular ubiquinone trafficking in Saccharomyces cerevisiae using artificial ubiquinone probe. Biochim. Biophys. Acta Bioenerg., 1865(4), 149147, 2023.📄

2023

81) Konaka H, Kato Y, Hirano T, Tsujimoto K, Park J, Koba T, Aoki W, Matsuzaki Y, Taki M, Koyama S, Itotagawa E, Jo T, Hirayama T, Kawai T, Ishii KJ, Ueda M, Yamaguchi S, Akira S, Morita T, Maeda Y, Nishide M, Nishida S, Shima Y, Narazaki M, Takamatsu H, Kumanogoh A. Secretion of mitochondrial DNA via exosomes promotes inflammation in Behçet's syndrome. EMBO J., 42(20), e112573, 2023.📄

80) Tsujimoto K, Jo T, Nagira D, Konaka H, Park JH, Yoshimura SI, Ninomiya A, Sugihara F, Hirayama T, Itotagawa E, Matsuzaki Y, Takaichi Y, Aoki W, Saita S, Nakamura S, Ballabio A, Nada S, Okada M, Takamatsu H, Kumanogoh A. The lysosomal Ragulator complex activates NLRP3 inflammasome in vivo via HDAC6. EMBO J., 42(1), e111389, 2023.📄

79) Yamazoe M, Ozasa H, Tsuji T, Funazo T, Yoshida H, Hashimoto K, Hosoya K, Ogimoto T, Ajimizu H, Yoshida H, Itotani R, Sakamori Y, Kuninaga K, Aoki W, Hirai T. Yes-associated protein 1 mediates initial cell survival during lorlatinib treatment through AKT signaling in ROS1-rearranged lung cancer. Cancer Sci., 114(2), 546–560, 2023.📄

78) Miyazaki T, Aoki W, Koike N, Sato T, Ueda M. Application of peptide barcoding to obtain high-affinity anti-PD-1 nanobodies. J. Biosci. Bioeng., 136(3), 173–181, 2023.📄

77) Sato T, Matsuda S, Aoki W. Optimizing conditions to construct artificial cells using commercial in vitro transcription-translation system (PUREfrex2.0). J. Biosci. Bioeng., 136(4), 334–339, 2023.📄

76) Takagi T, Aoyama K, Motone K, Aburaya S, Yamashiro H, Miura N, Inoue K. Mutualistic interactions between dinoflagellates and pigmented bacteria mitigate environmental stress. Microbiol. Spectrum., e02464-22, 2023.📄

2022

75) Aoki W, Kogawa M, Matsuda S, Matsubara K, Hirata S, Nishikawa Y, Hosokawa M, Takeyama H, Matoh T, Ueda M. Massively parallel single-cell genomics of microbiomes in rice paddies. Front. Microbiol., 13, 1024640, 2022.📄

74) Yamauchi Y, Matsukura H, Motone K, Ueda M, Aoki W. Evaluation of a library of loxP variants with a wide range of recombination efficiencies by Cre. PLoS One, 17(10), e0276657, 2022.📄

73) Saito H, Ueda M, Aoki W. Enhancement of PET degradation by PET depolymerase with the microbe addition. Biosci. Biotechnol. Biochem., 86(10), 1482–1484, 2022.📄

72) Takimoto R, Tatemichi Y, Aoki W, Kosaka Y, Minakuchi H, Ueda M, Kuroda K. A critical role of an oxygen-responsive gene for aerobic nitrogenase activity in Azotobacter vinelandii and its application to Escherichia coli. Sci. Rep., 12(1), 4182, 2022.📄

2021

71) Matsuzaki Y, Aoki W, Miyazaki T, Aburaya S, Ohtani Y, Kajiwara K, Koike N, Minakuchi H, Miura N, Kadonosono T, Ueda M. Peptide barcoding for one-pot evaluation of sequence-function relationships of nanobodies. Sci. Rep., 11(1), 21516, 2021.📄

70) Kajiwara K, Aoki W, Koike N, Ueda M. Development of a yeast cell surface display method using the SpyTag/SpyCatcher system. Sci. Rep., 11(1), 11059, 2021.📄

69) Ishikawa M, Masuya T, Tanaka H, Aoki W, Hantman N, Butler NL, Murai M, Barquera B, Miyoshi H. Specific chemical modification explores dynamic structure of the NqrB subunit in Na+-pumping NADH-ubiquinone oxidoreductase from Vibrio cholerae. Biochim. Biophys. Acta Bioenerg., 1862(8), 148432, 2021.📄

68) Watanabe H, Usami R, Kishino S, Osada K, Aoki Y, Morisaka H, Takahashi M, Izumi Y, Bamba T, Aoki W, Suganuma H, Ogawa J. Enzyme systems involved in glucosinolate metabolism in Companilactobacillus farciminis KB1089. Sci. Rep., 11(1), 23715, 2021.📄

67) Yokoyama F, Imai T, Aoki W, Ueda M, Kawamoto J, Kurihara T. Identification of a putative sensor protein involved in regulation of vesicle production by a hypervesiculating bacterium, Shewanella vesiculosa HM13. Front. Microbiol., 12, 629023, 2021.📄

66) Hibi M, Fukuda D, Kenchu C, Nojiri M, Hara R, Takeuchi M, Aburaya S, Aoki W, Mizutani K, Yasohara Y, Ueda M, Mikami B, Takahashi S, Ogawa J. A three-component monooxygenase from Rhodococcus wratislaviensis may expand industrial applications of bacterial enzymes. Commun. Biol., 4, 16, 2021.📄

2020

65) Kozono I, Takeuchi M, Kozono S, Satomura A, Aoki W, Hibi M, Ogawa J. Characterization of xanthine oxidase from Cellulosimicrobium funkei possessing hypoxanthine-metabolizing activity. Appl. Microbiol., 130(6), 2132–2140, 2020.📄

64) Kosaka Y, Aoki W, Mori M, Aburaya S, Ohtani Y, Minakuchi H, Ueda M. Selected reaction monitoring for the quantification of Escherichia coli ribosomal proteins. PLoS One, 15(12), e0236850, 2020.📄

63) Watanabe Y, Aoki W, Ueda M. Improved ammonia production from soybean residues by cell surface-displayed L-amino acid oxidase on yeast. Biosci. Biotechnol. Biochem., 85(4), 972–980, 2020.📄

62) Aburaya S, Yamauchi Y, Hashimoto T, Minakuchi H, Aoki W, Ueda M. Neuronal subclass-selective proteomic analysis in Caenorhabditis elegans. Sci. Rep., 10(1), 13840, 2020.📄

61) Tsuji T, Ozasa H, Aoki W, Aburaya S, Yamamoto Funazo T, Furugaki K, Yoshimura Y, Yamazoe M, Ajimizu H, Yasuda Y, Nomizo T, Yoshida H, Sakamori Y, Wake H, Ueda M, Kim YH, Hirai T. YAP1 mediates survival of ALK-rearranged lung cancer cells treated with alectinib via pro-apoptotic protein regulation. Nat. Commun., 11(1), 74, 2020.📄

60) Yoshida T, Ujiie R, Savitzky AH, Jono T, Inoue T, Yoshinaga N, Aburaya S, Aoki W, Takeuchi H, Ding L, Chen Q, Cao C, Tsai TS, Silva A, Mahaulpatha D, Nguyen TT, Tang Y, Mori N, Mori A. Dramatic dietary shift maintains sequestered toxins in chemically defended snakes. Proc. Natl. Acad. Sci. U.S.A., 117(11), 5964–5969, 2020.📄

59) Motone K, Takagi T, Aburaya S, Miura N, Aoki W, Ueda M. A zeaxanthin-producing bacterium isolated from the algal phycosphere protects coral endosymbionts from environmental stress. mBio, 11(1), e01019-19, 2020.📄

58) Kajiwara K, Aoki W, Ueda M. Evaluation of the yeast surface display system for screening of functional nanobodies. AMB Express, 10(1), 51, 2020.📄

57) Watanabe Y, Kuroda K, Tatemichi Y, Nakahara T, Aoki W, Ueda M. Construction of engineered yeast producing ammonia from glutamine and soybean residues (okara). AMB Express, 10(1), 70, 2020.📄

56) Kitamura R, Miura N, Okada K, Motone K, Takagi T, Ueda M, Kataoka M. Design of novel primer sets for easy detection of Ruegeria species from seawater. Biosci. Biotechnol. Biochem., 84, 854–864, 2020.📄

2019

55) Tsuji T, Ozasa H, Aoki W, Aburaya S, Funazo T, Furugaki K, Yoshimura Y, Ajimizu H, Okutani R, Yasuda Y, Nomizo T, Uemasu K, Hasegawa K, Yoshida H, Yagi Y, Nagai H, Sakamori Y, Ueda M, Hirai T, Kim YH. Alectinib resistance in ALK-rearranged lung cancer by dual salvage signaling in a clinically paired resistance model. Mol. Cancer Res., 17(1), 212–224, 2019.📄

54) Yaginuma K, Aoki W, Miura N, Ohtani Y, Aburaya S, Kogawa M, Nishikawa Y, Hosokawa M, Takeyama H, Ueda M. High-throughput identification of peptide agonists against GPCRs by co-culture of mammalian reporter cells and peptide-secreting yeast cells using droplet microfluidics. Sci. Rep., 9(1), 10920, 2019.📄

53) Ohtani Y, Aburaya S, Minakuchi H, Miura N, Aoki W, Ueda M. Evaluation of meter-long monolithic columns for selected reaction monitoring mass spectrometry. J. Biosci. Bioeng., 128(3), 379–383, 2019.📄

52) Aburaya S, Aoki W, Kuroda K, Minakuchi H, Ueda M. Temporal proteome dynamics of Clostridium cellulovorans cultured with major plant cell wall polysaccharides. BMC Microbiol., 19(1), 118, 2019.📄

51) Miyamoto K, Aoki W, Ohtani Y, Miura N, Aburaya S, Matsuzaki Y, Kajiwara K, Kitagawa Y, Ueda M. Peptide barcoding for establishment of new types of genotype–phenotype linkages. PLoS One, 14(4), e0215993, 2019.📄

50) Unten Y, Murai M, Yamamoto T, Watanabe A, Ichimaru N, Aburaya S, Aoki W, Shinohara Y, Miyoshi H. Pentenediol-type compounds specifically bind to voltage-dependent anion channel 1 in Saccharomyces cerevisiae mitochondria. Biochemistry, 58(8), 1141–1154, 2019.📄

49) Takanashi K, Nakagawa Y, Aburaya S, Kaminade K, Aoki W, Saida-Munakata Y, Sugiyama A, Ueda M, Yazaki K. Comparative proteomic analysis of Lithospermum erythrorhizon reveals regulation of a variety of metabolic enzymes leading to comprehensive understanding of the shikonin biosynthetic pathway. Plant Cell Physiol., 60(1), 19–28, 2019.📄

48) Miura N, Motone K, Takagi T, Aburaya S, Watanabe S, Aoki W, Ueda M. Ruegeria sp. strains isolated from the reef-building coral Galaxea fascicularis inhibit growth of the temperature-dependent pathogen Vibrio coralliilyticus. Mar. Biotechnol., 21(1), 1–8, 2019.📄

47) Miura N, Miyamoto K, Ohtani Y, Yaginuma K, Aburaya S, Kitagawa Y, Aoki W, Ueda M. Domain swapping of complementarity-determining region in nanobodies produced by Pichia pastoris. AMB Express, 9(1), 107, 2019.📄

2018

46) Aoki W, Matsukura H, Yamauchi Y, Yokoyama H, Hasegawa K, Shinya R, Ueda M. Cellomics approach for high-throughput functional annotation of Caenorhabditis elegans neural network. Sci. Rep., 8(1), 10380, 2018.📄

45) Kato Y, Park J, Takamatsu H, Konaka H, Aoki W, Aburaya S, Ueda M, Nishide M, Koyama S, Hayama Y, Kinehara Y, Hirano T, Shima Y, Narazaki M, Kumanogoh A. Apoptosis-derived membrane vesicles drive the cGAS-STING pathway and enhance type I IFN production in systemic lupus erythematosus. Ann. Rheum. Dis., 77(10), 1507–1515, 2018.📄

44) Komura R, Aoki W, Motone K, Satomura A, Ueda M. High-throughput evaluation of T7 promoter variants using biased randomization and DNA barcoding. PLoS One, 13(5), e0196905, 2018.📄

43) Aoyama A, Murai M, Ichimaru N, Aburaya S, Aoki W, Miyoshi H. Epoxycyclohexenedione-type compounds make up a new class of inhibitors of the bovine mitochondrial ADP/ATP carrier. Biochemistry, 57(6), 1031–1044, 2018.📄

42) Watanabe S, Ohtani Y, Aoki W, Uno Y, Sukekiyo Y, Kubokawa S, Ueda M. Detection of betacyanin in red-tube spinach (Spinacia oleracea) and its biofortification by strategic hydroponics. PLoS One, 13(9), e0203656, 2018.📄

41) Kitajima S, Aoki W, Shibata D, Nakajima D, Sakurai N, Yazaki K, Munakata R, Taira T, Kobayashi M, Aburaya S, Savadogo EH, Hibino S, Yano H. Comparative multi-omics analysis reveals diverse latex-based defense strategies against pests among latex-producing organs of the fig tree (Ficus carica). Planta, 247(6), 1423–1438, 2018.📄

40) Tatsukami Y, Morisaka H, Aburaya S, Aoki W, Kohsaka C, Tani M, Hirooka K, Yamamoto Y, Kitaoka A, Fujiwara H, Wakai Y, Ueda M. Metabolite profiling of the fermentation process of "yamahai-ginjo-shikomi" Japanese sake. PLoS One, 13(1), e0190040, 2018.📄

39) Motone K, Takagi T, Aburaya S, Aoki W, Miura N, Minakuchi H, Takeyama H, Nagasaki Y, Shinzato C, Ueda M. Protection of coral larvae from thermally induced oxidative stress by redox nanoparticles. Mar. Biotechnol., 20(4), 542–548, 2018.📄

38) Takamura Y, Aoki W, Satomura A, Shibasaki S, Ueda M. Small RNAs detected in exosomes derived from the MH7A synovial fibroblast cell line with TNF-α stimulation. PLoS One, 13(8), e0201851, 2018.📄

37) Ali RAM, Espulgar W, Aoki W, Jiang S, Saito M, Ueda M, Tamiya E. One-step nanoimprinted hybrid micro-/nano-structure for in situ protein detection of isolated cell array via localized surface plasmon resonance. Jpn. J. Appl. Phys., 57, 3S2, 2018.📄

36) Sasaki Y, Takagi T, Motone K, Shibata T, Kuroda K, Ueda M. Direct bioethanol production from brown macroalgae by co-culture of two engineered Saccharomyces cerevisiae strains. Biosci. Biotechnol. Biochem., 82, 1459–1462, 2018.📄

2017

35) Aburaya S, Aoki W, Minakuchi H, Ueda M. Definitive screening design enables optimization of LC-ESI-MS/MS parameters in proteomics. Biosci. Biotechnol. Biochem., 81(12), 2237–2243, 2017.📄

34) Watanabe S, Ohtani Y, Tatsukami Y, Aoki W, Amemiya T, Sukekiyo Y, Kubokawa S, Ueda M. Folate biofortification in hydroponically cultivated spinach by the addition of phenylalanine. Agric. Food Chem., 65(23), 4605–4610, 2017.📄

33) Masuya T, Murai M, Ito T, Aburaya S, Aoki W, Miyoshi H. Pinpoint chemical modification of the quinone-access channel of mitochondrial complex I via a two-step conjugation reaction. Biochemistry, 56(32), 4279–4287, 2017.📄

32) Mikami Y, Yoneda H, Tatsukami Y, Aoki W, Ueda M. Ammonia production from amino acid-based biomass-like sources by engineered Escherichia coli. AMB Express, 7(1), 83, 2017.📄

31) Zawrotniak M, Bochenska O, Karkowska-Kuleta J, Seweryn-Ozog K, Aoki W, Ueda M, Kozik A, Rapala-Kozik M. Aspartic proteases and major cell wall components in Candida albicans trigger the release of neutrophil extracellular traps. Front. Cell. Infect. Microbiol., 7, 414, 2017.📄

30) Chung J, Aburaya S, Aoki W, Ueda M. Molecular changes in appearance of a cancer cell among normal HEK293T cells. J. Biosci. Bioeng., 123(3), 281–286, 2017.📄

29) Takagi T, Sasaki Y, Motone K, Shibata T, Tanaka R, Miyake H, Mori T, Kuroda K, Ueda M. Construction of bioengineered yeast platform for direct bioethanol production from alginate and mannitol. Appl. Microbiol. Biotechnol., 101, 6627–6636, 2017.📄

28) Sasaki Y, Takagi T, Motone K, Kuroda K, Ueda M. Enhanced direct ethanol production by cofactor optimization of cell surface-displayed xylose isomerase in yeast. Biotechnol. Prog., 33, 1068–1076, 2017.📄

2016

27) Motone K, Takagi T, Sasaki Y, Kuroda K, Ueda M. Direct ethanol fermentation of the algal storage polysaccharide laminarin with an optimized combination of engineered yeasts. J. Biotechnol., 231, 129–135, 2016.📄

26) Murai M, Inaoka H, Masuya T, Aburaya S, Aoki W, Miyoshi H. Specific methylation of Asp160 (49 kDa subunit) located inside the quinone binding cavity of bovine mitochondrial complex I. Biochemistry, 55(23), 3189–3197, 2016.📄

25) Shibasaki S, Karasaki M, Aburaya S, Morisaka H, Takeda Y, Aoki W, Kitano S, Kitano M, Ueda M, Sano H, Iwasaki T. A comparative proteomics study of a synovial cell line stimulated with TNF-α. FEBS Open Bio, 6(5), 418–424, 2016.📄

24) Okuda K, Murai M, Aburaya S, Aoki W, Miyoshi H. Reduction of synthetic ubiquinone QT catalyzed by bovine mitochondrial complex I is decoupled from proton translocation. Biochemistry, 55(3), 470–481, 2016.📄

23) Gogol M, Ostrowska D, Klaga K, Bochenska O, Wolak N, Aoki W, Ueda M, Kozik A, Rapala-Kozik M. Inactivation of α1-proteinase inhibitor by Candida albicans aspartic proteases favors the epithelial and endothelial cell colonization in the presence of neutrophil extracellular traps. Acta Biochim. Pol., 63(1), 167–175, 2016.📄

22) Bochenska O, Rapala-Kozik M, Wolak N, Aoki W, Ueda M, Kozik A. The action of ten secreted aspartic proteases of pathogenic yeast Candida albicans on major human salivary antimicrobial peptide, histatin 5. Acta Biochim. Pol., 63(3), 403–410, 2016.📄

21) Kitajima S, Miura K, Aoki W, Yamato K, Taira T, Murakami R, Aburaya S. Transcriptome and proteome analyses provide insight into laticifer's defense of Euphorbia tirucalli against pests. Plant Physiol. Biochem., 108, 434–446, 2016.📄

2015

20) Kitahara N, Morisaka H, Aoki W, Takeda Y, Shibasaki S, Kuroda K, Ueda M. Description of the interaction between Candida albicans and macrophages by mixed and quantitative proteome analysis without isolation. AMB express, 5(1), 127, 2015.📄

19) Espulgar W, Aoki W, Ikeuchi T, Mita D, Saito M, Lee JK, Tamiya E. Centrifugal microfluidic platform for single-cell level cardiomyocyte-based drug profiling and screening. Lab Chip, 15(17), 3572–3580, 2015.📄

18) Espulgar W, Yamaguchi Y, Aoki W, Mita D, Saito M, Lee JK, Tamiya E. Single cell trapping and cell-cell interaction monitoring of cardiomyocytes in a designed microfluidic chip. Sens. Actuators B: Chem., 207, 43–50, 2015.📄

17) Kozik A, Gogol M, Bochenska O, Karkowska-Kuleta J, Wolak N, Kamysz W, Aoki W, Ueda M, Faussner A, Rapala-Kozik M. Kinin release from human kininogen by 10 aspartic proteases produced by pathogenic yeast Candida albicans. BMC Microbiol., 15, 60, 2015.📄

16) Rapala-Kozik M, Bochenska O, Zawrotniak M, Wolak N, Trebacz G, Gogol M, Ostrowska D, Aoki W, Ueda M, Kozik A. Inactivation of the antifungal and immunomodulatory properties of human cathelicidin LL-37 by aspartic proteases produced by the pathogenic yeast Candida albicans. Infect. Immun., 83(6), 2518–2530, 2015.📄

15) Bochenska O, Rapala-Kozik M, Wolak N, Kamysz W, Grzywacz D, Aoki W, Ueda M, Kozik A. Inactivation of human kininogen-derived antimicrobial peptides by secreted aspartic proteases produced by the pathogenic yeast Candida albicans. Biol. Chem., 396(12), 1369–1375, 2015.📄

2014

14) Aoki W, Saito M, Manabe R, Mori H, Yamaguchi Y, Tamiya E. Integrating reductive and synthetic approaches in biology using man-made cell-like compartments. Sci. Rep., 4, 4722, 2014.📄

13) Shibasaki S, Aoki W, Nomura T, Karasaki M, Sewaki T, Ueda M. Evaluation of Mdh1 protein as an antigenic candidate of a vaccine against candidiasis. Biocontrol Sci., 19(1), 51–55, 2014.📄

12) Shibasaki S, Karasaki M, Tafuku S, Aoki W, Sewaki T, Ueda M. Oral immunization against candidiasis using Lactobacillus casei displaying Enolase 1 from Candida albicans. Sci. Pharm., 82(3), 697–708, 2014.📄

2013

11) Aoki W, Tatsukami Y, Kitahara N, Matsui K, Morisaka H, Kuroda K, Ueda M. Elucidation of potentially virulent factors of Candida albicans during serum adaptation by using quantitative time-course proteomics. Proteomics, 91, 417–429, 2013.📄

10) Bochenska O, Rapala-Kozik M, Wolak N, Bras G, Kozik A, Dubin A, Aoki W, Ueda M, Mak P. Secreted aspartic peptidases of Candida albicans liberate bactericidal hemocidins from human hemoglobin. Peptides, 48, 49–58, 2013.📄

9) Shibasaki S, Aoki W, Nomura T, Miyoshi A, Tafuku S, Sewaki T, Ueda M. An oral vaccine against candidiasis generated by a yeast molecular display system. Pathog. Dis., 69(3), 262–268, 2013.📄

8) Aoki W, Kitahara N, Fujita A, Shibasaki S, Morisaka H, Kuroda K, Ueda M. Detection of Candida albicans by using a designed fluorescence-quenched peptide. J. Biosci. Bioeng., 116(5), 573–575, 2013.📄

7) Aoki W, Ueda T, Tatsukami Y, Kitahara N, Morisaka H, Kuroda K, Ueda M. Time-course proteomic profile of Candida albicans during adaptation to a fetal serum. Pathog. Dis., 67(1), 67–75, 2013.📄

2012

6) Aoki W, Kitahara N, Miura N, Morisaka H, Kuroda K, Ueda M. Design of a novel antimicrobial peptide activated by virulent proteases. Chem. Biol. Drug Des., 80(5), 725–733, 2012.📄

5) Aoki W, Kitahara N, Miura N, Morisaka H, Kuroda K, Ueda M. Profiling of adhesive properties of the agglutinin-like sequence (ALS) protein family, a virulent attribute of Candida albicans. FEMS Immunol. Med. Microbiol., 65(1), 121–124, 2012.📄

4) Aoki W, Kitahara N, Miura N, Morisaka H, Yamamoto Y, Kuroda K, Ueda M. Candida albicans possesses Sap7 as a pepstatin A-insensitive secreted aspartic protease. PLoS One, 7(2), e32513, 2012.📄

2011

3) Aoki W, Kitahara N, Miura N, Morisaka H, Yamamoto Y, Kuroda K, Ueda M. Comprehensive characterization of secreted aspartic proteases encoded by a virulence gene family in Candida albicans. J. Biochem., 150(4), 431–438, 2011.📄

2) Aoki W, Yoshino Y, Morisaka H, Tsunetomo K, Koyo H, Kamiya S, Kawata N, Kuroda K, Ueda M. High-throughput screening of improved protease inhibitors using a yeast cell surface display system and a yeast cell chip. J. Biosci. Bioeng., 111(1), 16–18, 2011.📄

2009

1) Miura N, Aoki W, Tokumoto N, Kuroda K, Ueda M. Cell-surface modification of non-GMO without chemical treatment by novel GMO-coupled and -separated cocultivation method. Appl. Microbiol. Biotechnol., 82(2), 293–301, 2009.📄

Reviews

7) Motone K, Nivala J. Not if but when nanopore protein sequencing meets single-cell proteomics. Nat. Methods., 20, 336–338, 2023.📄

6) Matsuzaki Y, Kajiwara K, Aoki W, Ueda M. Production of single-domain antibodies in Pichia pastoris. Methods Mol. Biol., 2446, 181–203, 2022.📄

5) Motone K, Cardozo N, Nivala J. Herding cats: Label-based approaches in protein translocation through nanopore sensors for single-molecule protein sequence analysis. iScience, 24, 103032, 2021.📄

4) Watanabe Y, Aoki W, Ueda M. Sustainable biological ammonia production towards a carbon-free society. Sustainability, 13(17), 9496, 2021.📄

3) Shibasaki S, Karasaki M, Aoki W, Ueda M. Molecular and physiological study of Candida albicans by quantitative proteome analysis. Proteomes, 6(3), 34, 2018.📄

2) Aoki W, Ueda M. Characterization of antimicrobial peptides toward the development of novel antibiotics. Pharmaceuticals, 6(8), 1055–1081, 2013.📄

1) Aoki W, Kuroda K, Ueda M. Next generation of antimicrobial peptides as molecular targeted medicines. J. Biosci. Bioeng., 114(4), 365–370, 2012.📄

Books

4) Shibasaki S, Karasaki M, Aoki W, Ueda M. Prompt and convenient preparation of oral vaccines using yeast cell surface display. Fungal Biotechnology and Bioengineering, Springer, 2020.

3) Aoki W. Engineering antibodies and alternative binders for therapeutic uses. Yeast Cell Surface Engineering, Springer, 2019.

2) Aburaya S, Aoki W, Ueda M. Proteome analysis of soft-biomass microbial-degradation using monolith-based nano-LC/MS/MS. Proteomics: Advances in Research and Applications, Nova Science Publishers, 2019.

1) Aoki W, Ueda M. New developments in the pathogenesis of Candida albicans: characterization of secreted aspartic proteases and profiling of survival mechanism in blood. Candida albicans: Symptoms, Causes and Treatment Options, Nova Science Publishers, 2013.

Japanese Books and Reviews

22) 青木航
第7章網羅的解析 論文図表を読む作法, 羊土社, 2022.

21) 渡邉幸夫, 青木航, 植田充美カーボンフリーバイオアンモニア生産プラットフォームの開発 クリーンエネルギー, 3月号, 2022.

20) 渡邉幸夫, 青木航
カーボンフリーバイオアンモニア燃料の開発 バイオエネルギー再燃, シーエムシー出版, 2021.

19) 青木航
1細胞プロテオミクスの最先端 月刊「細胞」, 10月号, 2021.

18) 青木航
データ駆動型サイエンスによる高次生命現象の理解 酵素工学ニュース, 第86号, 2021.

17) 青木航
機能的セル・オミックスによる個体レベルの生命現象の理解 生物工学会誌, 第99巻, 第6号, 2021.

16) 青木航, 植田充美新規「機能的セロミクス」と「シングルセルゲノム精密編集技術」の融合に向けて シングルセル解析でなにがわかるか, 化学同人, 2020.

15) 青木航
医薬展開を目指した抗体および非抗体スキャフォールドバインダーの指向性進化 細胞表層工学の進展, シーエムシー出版, 2020.

14) 青木航
ペプチドバーコーディング法による抗体エンジニアリング 月刊「細胞」, 11月号, 2020.

13) 青木航
機能的セロミクスによる線虫脳機能の網羅的アノテーション バイオイノベーションに向けて～バイオテクノロジーの新技術からの新しい視点～, シーエムシー出版, 2019.

12) 柳沼謙志, 青木航, 植田充美細胞膜レセプターに対するハイスループットリガンドアッセイの構築 バイオイノベーションに向けて～バイオテクノロジーの新技術からの新しい視点～, シーエムシー出版, 2019.

11) 青木航
脳機能の解明を目指した個体レベルのdata-driven scienceの実装 AI導入によるバイオテクノロジーの発展, シーエムシー出版, 2018.

10) 青木航
ボトムアップで細胞を理解する「リバース分子生物学」の提唱 人工細胞の創製とその応用, シーエムシー出版, 2017.

9) 古村崚, 青木航, 植田充美クレイグ・ベンターの戦略 人工細胞の創製とその応用, シーエムシー出版, 2017.

8) 青木航
2章試薬の取り扱い 実験を安全に行うために 第8版, 化学同人, 2017.

7) 青木航 若手研究者が独創的な研究を生み出すために 実験医学, Vol. 35, No. 13, 2017.

6) 青木航
日本農芸化学会大会見聞記 バイオサイエンスとインダストリー, Vol. 74, No. 4, 2016.

5) 青木航, 植田充美生命の完全な理解を目指して―構成的遺伝学の提唱によるバイオインターフェイスの新しい視点― 生物工学会誌, 第94巻, 第11号, 2016.

4) 青木航
第三の生体触媒 生物工学会誌, 第93巻, 第7号, 2015.

3) 青木航
第35回日本分子生物学会年会学術集会報告 酵素工学ニュース, 第69号, 2013.

2) 芝崎誠司, 青木航, 植田充美 Candida症の診断と予防を目指したCandida albicansの生化学的解析と分子ディスプレイ技術の応用 薬学雑誌, Vol. 133, No. 11, 2013.

1) 芝崎誠司, 青木航, 植田充美バイオディフェンス―免疫システム分子制御の新たな局面 薬学雑誌, Vol. 133, No. 11, 2013.